I2KxBINA 2026- Cultivating the Multiscale Imaging Frontier
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Floor plan -Discovery 1st floor
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Location
Discovery Building
Union South_ 5th Quarter Studio
Union South_Landmark
Union South_Agriculture
Discovery Building_Rm 1145
Discovery Building_Rm 1170
Discovery Building_Rm 1260
Discovery Building_H.F. DeLuca Forum - Rm. 1255
Discovery Building_ Orchard View
Morgridge Hall_ WARF Seminar Hub
Discovery Building_Teaching Lab_ Rm 2280
Morgridge Hall_ WARF Seminar Hub - Rm. 7560
Topics
Computational Imaging
napari
Fiji
colocalization
segmentation
QuPath
image analysis
reproducibility
Volume electron microscopy
Deep learning
Machine Learning/Large Language Models
multiplexed fluorescence imaging
light-sheet microscopy
Cell ACDC
annotation
CellProfiler
FAIR
Metadata
Image/data export
File formats
image aquisition workflows
image analysis workflows
Python
Prerequisites
Previously Installed FiJi
Previously installed QuPath
Previously Installed napari-phasors
Previously installed CAREamics
Previously installed napari
Previously installed Micro-Manager
Previously installed Python
Previously installed Inkscape
Previously installed BigVolumeBrowser
Previously Installed Miniconda
Previously Installed CellProfiler
Previously installed FLIM Playground app
Download Example/Sample Data
Pre-Registration REQUIRED!
Keywords
napari
napari-phasors
phasor analysis
fluorescence lifetime imaging microscopy
FLIM
hyperspectral imaging
HSI
open-source
bioimage analysis,
microscopy
Software
3D visualization
animation
large data
meshes
point clouds
QuPath
multiplex immunofluorescence
cell classification
Fiji
HDF5
N5
Zarr
NGFF
OME-Zarr
BigDataViewer
Metadata
storage
FAIR
sharing
data access
web application
cellcast
segmentation
deep learning
rust
3D annotation
proofreading
Paintera
shape interpolation
Segment Anything
ImgLib2
micro-sam
foundation models
microscopy images
colocalization
spatial correlation
SciJava
PyImageJ
tracking
GUI
active learning
Annotation
Navigate
smart microscopy
light-sheet microscopy
multiscale imaging
Cellprofiler
pipelines
image analysis
reproducible data
instance segmentation
ground-truth
label images
data augmentation
Cellpose
segmentation accuracy
Micro-Manager
pymmcore-plus
microscope control
image acquisition
QUAREP-LiMi
image publishing
microscopy figures
reproducibility
accessibility
colorblind
scale bars
Inkscape
checklists
figure preparation
3D segmentation
generalist model
Agentic microscopy
adaptive imaging
real-time analysis
MCP
Model Context Protocol
AI microscopy
Appose
Stardist
Large Language Models
LLMs
Chatbot
Scripting
Macros
Pixel calssification
OCR
Classifiers
Image export
neuron tracing
morphological reconstruction
image segmentation
quality control
ImageJ
Python
interoperability
Automation
Natural Language
Machine Learning
Ilastik
plugins
Benchmarks
Cell Tracking
Cell Segmentation
Cell Linking
Data Curation and Annotation
Multi-modal data integration
image registration
spatial data visualization
TissUUmaps
spatial analysis
Cell-ACDC
manual correction
z-stack
3D
image restoration
Noise2Void
MicroSplit
feature extraction
data analysis
lifetime fit
data visualization
interactive visualization
morphology and texture analysis
measurements
multi-dimensional microscopy data
Time zone
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